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<font size="3">SOAP is a program for efficient gapped and ungapped alignment of short oligonucleotides onto reference sequences.&nbsp;It is designed to handle&nbsp;large amounts of short reads generated by parallel sequencing using Illumina-Solexa sequencers. SOAP is compatible with numerous applications, including single-read&nbsp;and pair-end resequencing, small RNA discovery, and mRNA tag sequence mapping. SOAP is a command-driven program. It supports multi-threaded parallel computing, and has a batch module for multiple query sets.</font><br />
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Availability: <a href="http://soap.genomics.org.cn">http://soap.genomics.org.cn</a><br />
Contact: <a href="mailto:soap@genomics.org.cn">soap@genomics.org.cn</a>