Genome sequence mapping

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Genome sequence mapping algorithms

Bioinformatics resources for the next-generation sequencing technology 

Eland(Efficient Local Alignment of Nucleotide Data)

RMAP: A Program for mapping Solexa reads

SHRiMP-SHort Read Mapping Package

Maq: Mapping and Assembly with Qualities

SOAP-Short Oligonucleotide Analysis Package

SSAHA2(Sequence Search and Alignment by Hashing Algorithm)
 

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