Part 1: Molecular Biology Search and Analysis
3D-ALI - Database relating Proteins Structures and Sequences (see Documentation) at EMBL-Heidelberg
AA Analysis - Protein Identification in SwissProt and PIR using Amino Acid Composition at EMBL-Heidelberg
AA CompIdent - Protein Identification in SwissProt using Amino Acid Composition at ExPASy, Switzerland
AA CompSim - Compare the Amino Acid Composition of a SwissProt Entry with Other Entries at ExPASy, Switzerland
AA Sequence Analysis - Multiple Analysis of a Native or Modified Amino Acid Sequence at Rockefeller U.
AbCheck - Test an Antibody Sequence Against the Kabat Database at U. College-London, UK
ALIGN - Optimal Global Alignment of Two Sequences with No Short-cuts at EERIE-Nimes, France and Align at MIPS, Germany
AllAll - Relationships in a Set of Related Peptides at ETH-Zürich, Switzerland
AllAllDB - Search the All-Against-All Database of SwissProt at ETH-Zürich, Switzerland
AMAS - Analysis of Protein Multiple Sequence Alignments at U. Oxford, UK
ASC - Analytic Surface Calculation of PDB Protein Structures at EMBL-Heidelberg
ATLAS - Search DNA and Protein Sequence Databases at MIPS, Germany
BCM Search Launcher at
BEAUTY - BLAST Enhanced Alignment Utility (see Documentation) at Baylor College of Medicine
BERLIN - RNA Databank of 5S rRNA and 5S rRNA Gene Sequences at CAOS/CAMM, The Netherlands
BIOACCELERATOR at Weizmann Institute of Science, Israel
- Multiple Access to Biological Servers at OCMS-Oxford
Biological Units - Expanded PDB Entries with Full Biological Units at Brookhaven National Laboratory
Biologist's Search Palette - Collection of Search Engines for Biological Databases at Oxford U., UK
BLAST - Basic Local Alignment Research Tool at NCBI, BLAST (hiv, vector, etc) at Stanford U., BLAST at GenomeNet, Japan, BLAST at EERIE-Nimes, France, BLAST at CRIHAN, France BLAST (with Entrez and SRS Links) at Baylor College of Medicine and BLAST at EPFL, Switzerland
BLASTPAT - BLAST-based Pattern Database Search (see Documentation) at Baylor College of Medicine
BLITZ (see Documentation) at EMBL-Heidelberg and BLITZ at EBI, UK
BLOCKS - Database of Highly Conserved Regions in Proteins and BLOCKS-WAIS at Fred Hutchinson Cancer Research Center, BLOCKS at EMBL-Heidelberg and BLOCKS-Search w/ search from Iowa State
BioMagResBank - A Database of NMR-Derived Protein Structures at BIMAS-NIH
BioSCAN - Biological Sequence Comparative Analysis at U. North Caroline
BMCD - Biological Macromolecule Crystallization Database at CARB
BOXSHADE - Pretty Printing and Shading of Multiple-Sequence Alignments at ISREC, Switzerland
CATH - Protein Structure Classification at UCL-London, UK
CLUSTALW - Multiply Sequence Alignments at IBC-Washington U.
Codon Usage - Analysis of Different ORFs in a Gene Sequence at U. Minnesota
Coils - Prediction of Coiled Coil Regions in Protein Sequences at ISREC, Switzerland
CpGIsle - CpG Islands Database at BEN, Belgium
Darwin - Data Analysis and Retrieval With Indexed Nucleotide/Peptide Sequences at ETH-Zürich, Switzerland
dbEST - Database of Expressed Sequence Tags at NCBI
DBGET - Integrated Database Retrieval System (w/ diagram links) at GenomeNet, Japan
DDBJ - DNA Database of Japan at National Institute of Genetics, Japan
Dot Plot - Compare a DNA Sequence with Itself at U. Minnesota
DrugBank - Three-dimensional Drug Structure Databank at NIH
DSSP - Database of Secondary Structure of Proteins from PDB (see Documentation) at EMBL-Heidelberg
EC Enzyme at Johns Hopkins and EC Number Table at GenomeNet, Japan and GenoBase Enzyme Index at NIH
ECDC - E. coli Database Collection at Uni-Gießen, Germany
EMBL - Nucleotide Sequence Database and EMBL-New Entries at EMBnet-Basel
EMNEW - Index of New EMBL Sequences at EBI, UK
EMP Compound and EMP Pathways - Selkov Enzyme and Metabolic Pathway (EMP) Database at NIH
EMP Metabolic Pathways - Navigation in Metabolic Pathways from MCS-Computational Biology at Argonne National Laboratory
ENTREZ - Protein and Nucleotide Database (see Documentation) at NCBI
ENZYME - The Enzyme Data Bank at ExPASy, Switzerland
