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Hui-Su Kim

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Education

  • 03/2014 ~ 07/2017     Sungyunkwan University, South Korea
    • Ph.D. in Department of Biological Sciences
    • Thesis : Whole genome assembly of the monogonont rotifers Brachionus plicatilis and Brachionus calyciflorus and its application
    • Advisor : Prof. Jae-Seong Lee
  • 09/2010 ~ 02/2015     Hanyang University, South Korea
    • Ph.D candidate in Department of Chemistry
    • Advisor : Prof. Jae-Seong Lee
  • 09/2008 ~ 2010.07     Hanyang University, South Korea
    • Master of Science in Department of Life Science
    • Thesis : Fecal sex steroid hormone analysis for monitoring the reproductive cylce of leopard cat, Prionailurus bengalensis
    • Advisor : Prof. Yong-dal Yoon
  • 03/1997 ~ 07/2008     Hanyang University, South Korea
    • Bachelor of Science in Department of Life Science


Postdoctoral Fellowship

  • 09/2019 ~      KOrean Genomics Center, UNIST
  • 07/2017 ~ 09/2018     Post-doctoral researcher in BK21 plus, Jae-Seong Lee lab, Sunkyunkwan University


Publications

  1. Kim, H. S., Jeon, S. W., Kim, C. J., Kim, Y. K., Cho, Y. S., Kim, J. E., … Bhak, J. (2019). Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. Giga Science. https://doi.org/10.1093/gigascience/giz125
  2. Kim, J. E., Choi, J. P., Kim, H. S., Jo, Y. J., Min, W. G., Yum, S. S., Bhak, J. (2019). The complete mitochondrial genome of a Dokdo shrimp, Lebbeus groenlandicus. Mitochondrial DNA Part B. https://doi.org/10.1080/23802359.2019.1693290
  3. Han, J., Park, J. C., Choi, B. S., Kim, M. S., Kim, H. S., … Lee, J. S. (2019). The genome of the marine monogonont rotifer Brachionus plicatilis: Genome-wide expression profiles of 28 cytochrome P450 genes in response to chlorpyrifos and 2-ethyl-phenanthrene. Aqua Toxicology. https://doi.org/10.1016/j.aquatox.2019.105230
  4. Jeon, Y. S., Park, S. G., Lee, N. Y., Jessica, W., Kim, H. S., … Yum, S. S. (2019). The Draft Genome of an Octocoral, Dendronephthya gigantea. Genome Biology and Evolution. https://doi.org/10.1093/gbe/evz043
  5. Kim, H. S., Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., … Lee, J. S. (2018). The genome of the marine medaka Oryzias melastigma. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.12769
  6. Kim, H. S., Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., Lee, M. C., … Lee, J. S. (2018). The genome of the freshwater monogonont rotifer Brachionus calyciflorus. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.1276
  7. Lee, B. Y., Kim, D. H., Kim, H. S., Kim, B. M., Han, J., & Lee, J. S. (2018). Identification of 74 cytochrome P450 genes and co-localized cytochrome P450 genes of the CYP2K, CYP5A, and CYP46A subfamilies in the mangrove killifish Kryptolebias marmoratus. BMC Genomics. https://doi.org/10.1186/s12864-017-4410-2
  8. Han, J., Kim, D. H., Kim, H. S., Kim, H. J., Declerck, S. A. J., Hagiwara, A., & Lee, J. S. (2018). Genome-wide identification of 31 cytochrome P450 (CYP) genes in the freshwater rotifer Brachionus calyciflorus and analysis of their benzo[α]pyrene-induced expression patterns. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. https://doi.org/10.1016/j.cbd.2017.10.00
  9. Kim, D. H., Lee, B. Y., Kim, H. S., Jeong, C. B., Hwang, D. S., Kim, I. C., & Lee, J. S. (2018). Identification and characterization of homeobox (Hox) genes and conservation of the single Hox cluster (324.6 kb) in the water flea Daphnia magna. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. https://doi.org/10.1002/jez.b.22793
  10. Kim, H. S., Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., Lee, M. C., … Lee, J. S. (2018). The genome of the marine medaka Oryzias melastigma. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.12769
  11. Dong, M., Seemann, F., Humble, J. L., Liang, Y., Peterson, D. R., Ye, R., … Lam, Y. W. (2017). Modification of the plasma complement protein profile by exogenous estrogens is indicative of a compromised immune competence in marine medaka (Oryzias melastigma). Fish and Shellfish Immunology. https://doi.org/10.1016/j.fsi.2017.09.020
  12. Kim, D. H., Kim, H. S., Hwang, D. S., Kim, H. J., Hagiwara, A., Lee, J. S., & Jeong, C. B. (2017). Genome-wide identification of nuclear receptor (NR) genes and the evolutionary significance of the NR1O subfamily in the monogonont rotifer Brachionus spp. General and Comparative Endocrinology. https://doi.org/10.1016/j.ygcen.2017.06.030
  13. Kim, H. S., Han, J., Kim, H. J., Hagiwara, A., & Lee, J. S. (2017). Identification of 28 cytochrome P450 genes from the transcriptome of the marine rotifer Brachionus plicatilis and analysis of their expression. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. https://doi.org/10.1016/j.cbd.2017.04.005
  14. Jeong, C. B., Kim, H. S., Kang, H. M., & Lee, J. S. (2017). ATP-binding cassette (ABC) proteins in aquatic invertebrates: Evolutionary significance and application in marine ecotoxicology. Aquatic Toxicology. https://doi.org/10.1016/j.aquatox.2017.01.013
  15. Puthumana, J., Lee, M. C., Park, J. C., Kim, H. S., Hwang, D. S., Han, J., & Lee, J. S. (2017). Ultraviolet B radiation induces impaired lifecycle traits and modulates expression of cytochrome P450 (CYP) genes in the copepod Tigriopus japonicus. Aquatic Toxicology. https://doi.org/10.1016/j.aquatox.2017.01.011
  16. Jeong, C. B., Kim, D. H., Kang, H. M., Lee, Y. H., Kim, H. S., Kim, I. C., & Lee, J. S. (2017). Genome-wide identification of ATP-binding cassette (ABC) transporters and their roles in response to polycyclic aromatic hydrocarbons (PAHs) in the copepod Paracyclopina nana. Aquatic Toxicology. https://doi.org/10.1016/j.aquatox.2016.12.022
  17. Hwang, D. S., Lee, M. C., Kyung, D. H., Kim, H. S., Han, J., Kim, I. C., … Lee, J. S. (2017). WAFs lead molting retardation of naupliar stages with down-regulated expression profiles of chitin metabolic pathway and related genes in the copepod Tigriopus japonicus. Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology. https://doi.org/10.1016/j.cbpc.2016.12.002
  18. Puthumana, J., Lee, M. C., Han, J., Kim, H. S., Hwang, D. S., & Lee, J. S. (2017). Ecdysone receptor (EcR) and ultraspiracle (USP) genes from the cyclopoid copepod Paracyclopina nana: Identification and expression in response to water accommodated fractions (WAFs). Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology. https://doi.org/10.1016/j.cbpc.2016.11.002
  19. Kang, H. M., Jeong, C. B., Lee, Y. H., Cui, Y. H., Kim, D. H., Lee, M. C., … Lee, J. S. (2017). Cross-reactivities of mammalian MAPKs antibodies in rotifer and copepod: Application in mechanistic studies in aquatic ecotoxicology. Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2016.11.049
  20. Jeong, C. B., Kim, H. S., Kang, H. M., Lee, Y. H., Zhou, B., Choe, J., & Lee, J. S. (2017). Genome-wide identification of ATP-binding cassette (ABC) transporters and conservation of their xenobiotic transporter function in the monogonont rotifer (Brachionus koreanus). Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. https://doi.org/10.1016/j.cbd.2016.10.003
  21. Han, J., Kim, H. S., Kim, I. C., Kim, S., Hwang, U. K., & Lee, J. S. (2017). Effects of water accommodated fractions (WAFs) of crude oil in two congeneric copepods Tigriopus sp. Ecotoxicology and Environmental Safety. https://doi.org/10.1016/j.ecoenv.2017.07.065
  22. Han, J., Kim, D. H., Kim, H. S., Nelson, D. R., & Lee, J. S. (2017). Genome-wide identification of 52 cytochrome P450 (CYP) genes in the copepod Tigriopus japonicus and their B[α]P-induced expression patterns. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. https://doi.org/10.1016/j.cbd.2017.06.002
  23. Kim, H. S., Kim, B. M., Lee, B. Y., Souissi, S., Park, H. G., & Lee, J. S. (2016). Identification of Hox genes and rearrangements within the single homeobox (Hox) cluster (192.8kb) of the cyclopoid copepod (Paracyclopina nana). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 326(2), 105–109. https://doi.org/10.1002/jez.b.22668
  24. Kim, H. S., Hwang, D. S., Lee, B. Y., Park, J. C., Lee, Y. H., & Lee, J. S. (2016, April 7). De novo assembly and annotation of the marine mysid (Neomysis awatschensis) transcriptome. Marine Genomics. Elsevier.
  25. Kim, H. S., Lee, B. Y., Han, J., Lee, Y. H., Min, G. S., Kim, S., & Lee, J. S. (2016, March 29). De novo assembly and annotation of the Antarctic copepod (Tigriopus kingsejongensis) transcriptome. Marine Genomics. Elsevier.
  26. Dahms, H. U., Won, E. J., Kim, H. S., Han, J., Park, H. G., Souissi, S., … Lee, J. S. (2016). Potential of the small cyclopoid copepod Paracyclopina nana as an invertebrate model for ecotoxicity testing. Aquatic Toxicology. https://doi.org/10.1016/j.aquatox.2016.10.013
  27. Kim, H. S., Hwang, D. S., Hagiwara, A., Sakakura, Y., & Lee, J. S. (2016). Complete mitochondrial genome of the mangrove killifish Kryptolebias hermaphroditus (Cyprinodontiformes, Rivulidae). Mitochondrial DNA Part B: Resources. https://doi.org/10.1080/23802359.2016.1197075
  28. Kim, H. S., Kim, B.-M., Lee, B.-Y., Souissi, S., Park, H. G., & Lee, J.-S. (2016). Identification of Hox genes and rearrangements within the single homeobox (Hox) cluster (192.8 kb) of the cyclopoid copepod (Paracyclopina nana). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. https://doi.org/10.1002/jez.b.22668
  29. Han, J., Won, E. J., Kang, H. M., Lee, M. C., Jeong, C. B., Kim, H. S., … Lee, J. S. (2016). Marine copepod cytochrome P450 genes and their applications for molecular ecotoxicological studies in response to oil pollution. Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2016.09.048
  30. Won, E. J., Kim, R. O., Kang, H. M., Kim, H. S., Hwang, D. S., Han, J., … Lee, J. S. (2016). Adverse Effects, Expression of the Bk-CYP3045C1 Gene, and Activation of the ERK Signaling Pathway in the Water Accommodated Fraction-Exposed Rotifer. Environmental Science and Technology. https://doi.org/10.1021/acs.est.6b01306
  31. Kim, H. S., Hwang, D. S., Jeong, C. B., Au, D. W. T., & Lee, J. S. (2016). Identification and conservation of gene loss events of Hox gene clusters in the marine medaka (Oryzias melastigma). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. https://doi.org/10.1002/jez.b.22713
  32. Han, J., Won, E. J., Kim, H. S., Nelson, D. R., Lee, S. J., Park, H. G., & Lee, J. S. (2015). Identification of the full 46 Cytochrome P450 (CYP) complement and modulation of CYP expression in response to water-accommodated fractions of crude oil in the cyclopoid copepod paracyclopina nana. Environmental Science and Technology, 49(11), 6982–6992.
  33. Lee, B. Y., Kim, H. S., Hwang, D. S., Won, E. J., Choi, B. S., Choi, I. Y., … Lee, J. S. (2015). Whole transcriptome analysis of the monogonont rotifer Brachionus koreanus provides molecular resources for developing biomarkers of carbohydrate metabolism. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 14, 33–41. https://doi.org/10.1016/j.cbd.2015.02.003
  34. Kim, H. S., Lee, B. Y., Won, E. J., Han, J., Hwang, D. S., Park, H. G., & Lee, J. S. (2015). Identification of xenobiotic biodegradation and metabolism-related genes in the copepod Tigriopus japonicus whole transcriptome analysis. Marine Genomics, 24, 207–208.
  35. Lee, B. Y., Kim, H. S., Choi, B. S., Hwang, D. S., Choi, A. Y., Han, J., … Lee, J. S. (2015). RNA-seq based whole transcriptome analysis of the cyclopoid copepod Paracyclopina nana focusing on xenobiotics metabolism. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 15, 12–19.
  36. Kim, B. M., Choi, B. S., Kim, H. S., Rhee, J. S., Au, D. W. T., Wu, R. S. S., … Lee, J. S. (2015). Transcriptome profiling of larvae of the marine medaka Oryzias melastigma by Illumina RNA-seq. Marine Genomics. https://doi.org/10.1016/j.margen.2015.07.013
  37. Lee, M. C., Won, E. J., Lee, S. H., Hwang, D. S., Kim, H. S., Han, J., … Lee, J. S. (2015). Identification of insulin-like peptide 1 (ILP1) gene and its expression in response to different food sources in the intertidal copepod Tigriopus japonicus. Fisheries Science. https://doi.org/10.1007/s12562-015-0868-5
  38. Hwang, D. S., Lee, B. Y., Kim, H. S., Lee, C. C., Kyung, D. H., Om, A. S., … Lee, J. S. (2014). Genome-wide identification of nuclear receptor (NR) superfamily genes in the copepod Tigriopus japonicus. BMC Genomics. https://doi.org/10.1186/1471-2164-15-993
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