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Created page with " '''Education''' *03/2014 ~ 07/2017 Sungyunkwan University, South Korea **Ph.D. in Department of Biological Sciences **Thesis : Whole genome assembl..."
'''Education'''
*03/2014 ~ 07/2017 Sungyunkwan University, South Korea
**Ph.D. in Department of Biological Sciences
**Thesis : Whole genome assembly of the monogonont rotifers ''Brachionus plicatilis ''and ''Brachionus calyciflorus ''and its application
**Advisor : Prof. Jae-Seong Lee
*09/2010 ~ 02/2015 Hanyang University, South Korea
**Ph.D candidate in Department of Chemistry
**Advisor : Prof. Jae-Seong Lee
*09/2008 ~ 2010.07 Hanyang University, South Korea
**Master of Science in Department of Life Science
**Thesis : Fecal sex steroid hormone analysis for monitoring the reproductive cylce of leopard cat, ''Prionailurus bengalensis''
**Advisor : Prof. Yong-dal Yoon
*03/1997 ~ 07/2008 Hanyang University, South Korea
**Bachelor of Science in Department of Life Science
<br/> '''Postdoctoral Fellowship'''
*09/2019 ~ KOrean Genomics Center, UNIST
*07/2017 ~ 09/2018 Post-doctoral researcher in BK21 plus, Jae-Seong Lee lab, Sunkyunkwan University
<br/> '''Publications'''
#'''Kim, H. S.''', Jeon, S. W., Kim, C. J., Kim, Y. K., Cho, Y. S., Kim, J. E., … Bhak, J. (2019). Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. Giga Science. [https://doi.org/10.1093/gigascience/giz125 https://doi.org/10.1093/gigascience/giz125]
#Kim, J. E., Choi, J. P., '''Kim, H. S.''', Jo, Y. J., Min, W. G., Yum, S. S., Bhak, J. (2019). The complete mitochondrial genome of a Dokdo shrimp, Lebbeus groenlandicus. Mitochondrial DNA Part B. [https://doi.org/10.1080/23802359.2019.1693290 https://doi.org/10.1080/23802359.2019.1693290]
#Han, J., Park, J. C., Choi, B. S., Kim, M. S., '''Kim, H. S.''', … Lee, J. S. (2019). The genome of the marine monogonont rotifer Brachionus plicatilis: Genome-wide expression profiles of 28 cytochrome P450 genes in response to chlorpyrifos and 2-ethyl-phenanthrene. Aqua Toxicology. [https://doi.org/10.1016/j.aquatox.2019.105230 https://doi.org/10.1016/j.aquatox.2019.105230]
#Jeon, Y. S., Park, S. G., Lee, N. Y., Jessica, W., '''Kim, H. S.''', … Yum, S. S. (2019). The Draft Genome of an Octocoral, Dendronephthya gigantea. Genome Biology and Evolution. [https://doi.org/10.1093/gbe/evz043 https://doi.org/10.1093/gbe/evz043]
#'''Kim, H. S.''', Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., … Lee, J. S. (2018). The genome of the marine medaka Oryzias melastigma. Molecular Ecology Resources. [https://doi.org/10.1111/1755-0998.12769 https://doi.org/10.1111/1755-0998.12769]
#'''Kim, H. S.''', Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., Lee, M. C., … Lee, J. S. (2018). The genome of the freshwater monogonont rotifer Brachionus calyciflorus. Molecular Ecology Resources. [https://doi.org/10.1111/1755-0998.1276 https://doi.org/10.1111/1755-0998.1276]
#Lee, B. Y., Kim, D. H., '''Kim, H. S.''', Kim, B. M., Han, J., & Lee, J. S. (2018). Identification of 74 cytochrome P450 genes and co-localized cytochrome P450 genes of the CYP2K, CYP5A, and CYP46A subfamilies in the mangrove killifish Kryptolebias marmoratus. BMC Genomics. [https://doi.org/10.1186/s12864-017-4410-2 https://doi.org/10.1186/s12864-017-4410-2]
#Han, J., Kim, D. H., '''Kim, H. S.''', Kim, H. J., Declerck, S. A. J., Hagiwara, A., & Lee, J. S. (2018). Genome-wide identification of 31 cytochrome P450 (CYP) genes in the freshwater rotifer Brachionus calyciflorus and analysis of their benzo[α]pyrene-induced expression patterns. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. [https://doi.org/10.1016/j.cbd.2017.10.00 https://doi.org/10.1016/j.cbd.2017.10.00]
#Kim, D. H., Lee, B. Y., '''Kim, H. S.''', Jeong, C. B., Hwang, D. S., Kim, I. C., & Lee, J. S. (2018). Identification and characterization of homeobox (Hox) genes and conservation of the single Hox cluster (324.6 kb) in the water flea Daphnia magna. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. [https://doi.org/10.1002/jez.b.22793 https://doi.org/10.1002/jez.b.22793]
#'''Kim, H. S.''', Lee, B. Y., Han, J., Jeong, C. B., Hwang, D. S., Lee, M. C., … Lee, J. S. (2018). The genome of the marine medaka Oryzias melastigma. Molecular Ecology Resources. [https://doi.org/10.1111/1755-0998.12769 https://doi.org/10.1111/1755-0998.12769]
#Dong, M., Seemann, F., Humble, J. L., Liang, Y., Peterson, D. R., Ye, R., … Lam, Y. W. (2017). Modification of the plasma complement protein profile by exogenous estrogens is indicative of a compromised immune competence in marine medaka (Oryzias melastigma). Fish and Shellfish Immunology. [https://doi.org/10.1016/j.fsi.2017.09.020 https://doi.org/10.1016/j.fsi.2017.09.020]
#Kim, D. H., '''Kim, H. S.''', Hwang, D. S., Kim, H. J., Hagiwara, A., Lee, J. S., & Jeong, C. B. (2017). Genome-wide identification of nuclear receptor (NR) genes and the evolutionary significance of the NR1O subfamily in the monogonont rotifer Brachionus spp. General and Comparative Endocrinology. [https://doi.org/10.1016/j.ygcen.2017.06.030 https://doi.org/10.1016/j.ygcen.2017.06.030]
#'''Kim, H. S.''', Han, J., Kim, H. J., Hagiwara, A., & Lee, J. S. (2017). Identification of 28 cytochrome P450 genes from the transcriptome of the marine rotifer Brachionus plicatilis and analysis of their expression. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. [https://doi.org/10.1016/j.cbd.2017.04.005 https://doi.org/10.1016/j.cbd.2017.04.005]
#Jeong, C. B., '''Kim, H. S.''', Kang, H. M., & Lee, J. S. (2017). ATP-binding cassette (ABC) proteins in aquatic invertebrates: Evolutionary significance and application in marine ecotoxicology. Aquatic Toxicology. [https://doi.org/10.1016/j.aquatox.2017.01.013 https://doi.org/10.1016/j.aquatox.2017.01.013]
#Puthumana, J., Lee, M. C., Park, J. C., '''Kim, H. S.''', Hwang, D. S., Han, J., & Lee, J. S. (2017). Ultraviolet B radiation induces impaired lifecycle traits and modulates expression of cytochrome P450 (CYP) genes in the copepod Tigriopus japonicus. Aquatic Toxicology. [https://doi.org/10.1016/j.aquatox.2017.01.011 https://doi.org/10.1016/j.aquatox.2017.01.011]
#Jeong, C. B., Kim, D. H., Kang, H. M., Lee, Y. H., '''Kim, H. S.''', Kim, I. C., & Lee, J. S. (2017). Genome-wide identification of ATP-binding cassette (ABC) transporters and their roles in response to polycyclic aromatic hydrocarbons (PAHs) in the copepod Paracyclopina nana. Aquatic Toxicology. [https://doi.org/10.1016/j.aquatox.2016.12.022 https://doi.org/10.1016/j.aquatox.2016.12.022]
#Hwang, D. S., Lee, M. C., Kyung, D. H., '''Kim, H. S.''', Han, J., Kim, I. C., … Lee, J. S. (2017). WAFs lead molting retardation of naupliar stages with down-regulated expression profiles of chitin metabolic pathway and related genes in the copepod Tigriopus japonicus. Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology. [https://doi.org/10.1016/j.cbpc.2016.12.002 https://doi.org/10.1016/j.cbpc.2016.12.002]
#Puthumana, J., Lee, M. C., Han, J., '''Kim, H. S.''', Hwang, D. S., & Lee, J. S. (2017). Ecdysone receptor (EcR) and ultraspiracle (USP) genes from the cyclopoid copepod Paracyclopina nana: Identification and expression in response to water accommodated fractions (WAFs). Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology. [https://doi.org/10.1016/j.cbpc.2016.11.002 https://doi.org/10.1016/j.cbpc.2016.11.002]
#Kang, H. M., Jeong, C. B., Lee, Y. H., Cui, Y. H., Kim, D. H., Lee, M. C., … Lee, J. S. (2017). Cross-reactivities of mammalian MAPKs antibodies in rotifer and copepod: Application in mechanistic studies in aquatic ecotoxicology. Marine Pollution Bulletin. [https://doi.org/10.1016/j.marpolbul.2016.11.049 https://doi.org/10.1016/j.marpolbul.2016.11.049]
#Jeong, C. B., '''Kim, H. S.''', Kang, H. M., Lee, Y. H., Zhou, B., Choe, J., & Lee, J. S. (2017). Genome-wide identification of ATP-binding cassette (ABC) transporters and conservation of their xenobiotic transporter function in the monogonont rotifer (Brachionus koreanus). Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. [https://doi.org/10.1016/j.cbd.2016.10.003 https://doi.org/10.1016/j.cbd.2016.10.003]
#Han, J., '''Kim, H. S.''', Kim, I. C., Kim, S., Hwang, U. K., & Lee, J. S. (2017). Effects of water accommodated fractions (WAFs) of crude oil in two congeneric copepods Tigriopus sp. Ecotoxicology and Environmental Safety. [https://doi.org/10.1016/j.ecoenv.2017.07.065 https://doi.org/10.1016/j.ecoenv.2017.07.065]
#Han, J., Kim, D. H., '''Kim, H. S.''', Nelson, D. R., & Lee, J. S. (2017). Genome-wide identification of 52 cytochrome P450 (CYP) genes in the copepod Tigriopus japonicus and their B[α]P-induced expression patterns. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. [https://doi.org/10.1016/j.cbd.2017.06.002 https://doi.org/10.1016/j.cbd.2017.06.002]
#'''Kim, H. S.''', Kim, B. M., Lee, B. Y., Souissi, S., Park, H. G., & Lee, J. S. (2016). Identification of Hox genes and rearrangements within the single homeobox (Hox) cluster (192.8kb) of the cyclopoid copepod (Paracyclopina nana). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 326(2), 105–109. [https://doi.org/10.1002/jez.b.22668 https://doi.org/10.1002/jez.b.22668]
#'''Kim, H. S.''', Hwang, D. S., Lee, B. Y., Park, J. C., Lee, Y. H., & Lee, J. S. (2016, April 7). De novo assembly and annotation of the marine mysid (Neomysis awatschensis) transcriptome. Marine Genomics. Elsevier.
#'''Kim, H. S.''', Lee, B. Y., Han, J., Lee, Y. H., Min, G. S., Kim, S., & Lee, J. S. (2016, March 29). De novo assembly and annotation of the Antarctic copepod (Tigriopus kingsejongensis) transcriptome. Marine Genomics. Elsevier.
#Dahms, H. U., Won, E. J., '''Kim, H. S.''', Han, J., Park, H. G., Souissi, S., … Lee, J. S. (2016). Potential of the small cyclopoid copepod Paracyclopina nana as an invertebrate model for ecotoxicity testing. Aquatic Toxicology. [https://doi.org/10.1016/j.aquatox.2016.10.013 https://doi.org/10.1016/j.aquatox.2016.10.013]
#'''Kim, H. S.''', Hwang, D. S., Hagiwara, A., Sakakura, Y., & Lee, J. S. (2016). Complete mitochondrial genome of the mangrove killifish Kryptolebias hermaphroditus (Cyprinodontiformes, Rivulidae). Mitochondrial DNA Part B: Resources. [https://doi.org/10.1080/23802359.2016.1197075 https://doi.org/10.1080/23802359.2016.1197075]
#'''Kim, H. S.''', Kim, B.-M., Lee, B.-Y., Souissi, S., Park, H. G., & Lee, J.-S. (2016). Identification of Hox genes and rearrangements within the single homeobox (Hox) cluster (192.8 kb) of the cyclopoid copepod (Paracyclopina nana). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. [https://doi.org/10.1002/jez.b.22668 https://doi.org/10.1002/jez.b.22668]
#Han, J., Won, E. J., Kang, H. M., Lee, M. C., Jeong, C. B., '''Kim, H. S.''', … Lee, J. S. (2016). Marine copepod cytochrome P450 genes and their applications for molecular ecotoxicological studies in response to oil pollution. Marine Pollution Bulletin. [https://doi.org/10.1016/j.marpolbul.2016.09.048 https://doi.org/10.1016/j.marpolbul.2016.09.048]
#Won, E. J., Kim, R. O., Kang, H. M., '''Kim, H. S.''', Hwang, D. S., Han, J., … Lee, J. S. (2016). Adverse Effects, Expression of the Bk-CYP3045C1 Gene, and Activation of the ERK Signaling Pathway in the Water Accommodated Fraction-Exposed Rotifer. Environmental Science and Technology. [https://doi.org/10.1021/acs.est.6b01306 https://doi.org/10.1021/acs.est.6b01306]
#'''Kim, H. S.''', Hwang, D. S., Jeong, C. B., Au, D. W. T., & Lee, J. S. (2016). Identification and conservation of gene loss events of Hox gene clusters in the marine medaka (Oryzias melastigma). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. [https://doi.org/10.1002/jez.b.22713 https://doi.org/10.1002/jez.b.22713]
#Han, J., Won, E. J., '''Kim, H. S.''', Nelson, D. R., Lee, S. J., Park, H. G., & Lee, J. S. (2015). Identification of the full 46 Cytochrome P450 (CYP) complement and modulation of CYP expression in response to water-accommodated fractions of crude oil in the cyclopoid copepod paracyclopina nana. Environmental Science and Technology, 49(11), 6982–6992.
#Lee, B. Y., '''Kim, H. S.''', Hwang, D. S., Won, E. J., Choi, B. S., Choi, I. Y., … Lee, J. S. (2015). Whole transcriptome analysis of the monogonont rotifer Brachionus koreanus provides molecular resources for developing biomarkers of carbohydrate metabolism. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 14, 33–41. [https://doi.org/10.1016/j.cbd.2015.02.003 https://doi.org/10.1016/j.cbd.2015.02.003]
#'''Kim, H. S.''', Lee, B. Y., Won, E. J., Han, J., Hwang, D. S., Park, H. G., & Lee, J. S. (2015). Identification of xenobiotic biodegradation and metabolism-related genes in the copepod Tigriopus japonicus whole transcriptome analysis. Marine Genomics, 24, 207–208.
#Lee, B. Y., '''Kim, H. S.''', Choi, B. S., Hwang, D. S., Choi, A. Y., Han, J., … Lee, J. S. (2015). RNA-seq based whole transcriptome analysis of the cyclopoid copepod Paracyclopina nana focusing on xenobiotics metabolism. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 15, 12–19.
#Kim, B. M., Choi, B. S., '''Kim, H. S.''', Rhee, J. S., Au, D. W. T., Wu, R. S. S., … Lee, J. S. (2015). Transcriptome profiling of larvae of the marine medaka Oryzias melastigma by Illumina RNA-seq. Marine Genomics. [https://doi.org/10.1016/j.margen.2015.07.013 https://doi.org/10.1016/j.margen.2015.07.013]
#Lee, M. C., Won, E. J., Lee, S. H., Hwang, D. S., '''Kim, H. S.''', Han, J., … Lee, J. S. (2015). Identification of insulin-like peptide 1 (ILP1) gene and its expression in response to different food sources in the intertidal copepod Tigriopus japonicus. Fisheries Science. [https://doi.org/10.1007/s12562-015-0868-5 https://doi.org/10.1007/s12562-015-0868-5]
#Hwang, D. S., Lee, B. Y., '''Kim, H. S.''', Lee, C. C., Kyung, D. H., Om, A. S., … Lee, J. S. (2014). Genome-wide identification of nuclear receptor (NR) superfamily genes in the copepod Tigriopus japonicus. BMC Genomics. [https://doi.org/10.1186/1471-2164-15-993 https://doi.org/10.1186/1471-2164-15-993]