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Fungal genomics

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<h1>list of sequenced fungi genome paper     
        
 
Ascomycota  </h1>
<h3>   
Ascomycetes  </h3>
<ol>
<li>Neurospora crassa : 붉은빵곰팡이 류, model eukaryote,  2003, nature, The genome sequence of the filamentous fungus Neurospora crassa,  <a href="http://www.nature.com/nature/journal/v422/n6934/full/nature01554.html">http://www.nature.com/nature/journal/v422/n6934/full/nature01554.html</a> 
</li>
</ol>
<h3>Dothideomycetes        
</h3>
<ol>
<li>Leptosphaeria maculans :   plant pathogen, 2011, Nature, Communications Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations,  <a href="http://www.nature.com/ncomms/journal/v2/n2/full/ncomms1189.html">http://www.nature.com/ncomms/journal/v2/n2/full/ncomms1189.html</a> 
</li>
</ol>
<h3>Eurotiomycetes  </h3>
<ol>
<li>Aspergillus fumigatus :  human pathogen, 2008, PLoS Genetics,  Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus   
</li>
<li>Aspergillus fumigatus : human pathogen, 2005, nature, Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus,  <a href="http://www.nature.com/nature/journal/v438/n7071/full/nature04332.html">http://www.nature.com/nature/journal/v438/n7071/full/nature04332.html</a> 
</li>
<li>Aspergillus niger : 흑국균, industrial use, 2007, Nature Biotechnology Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88,  <a href="http://www.nature.com/nbt/journal/v25/n2/full/nbt1282.html">http://www.nature.com/nbt/journal/v25/n2/full/nbt1282.html</a> 
</li>
<li>Aspergillus oryzae : 누룩곰팡이, industrial use, 2005, nature, Genome sequencing and analysis of Aspergillus oryzae,  <a href="http://www.nature.com/nature/journal/v438/n7071/full/nature04300.html">http://www.nature.com/nature/journal/v438/n7071/full/nature04300.html</a> 
</li>
<li>Coccidioides immitis : human pathogen, 2009, Genome Res, Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives,  <a href="http://genome.cshlp.org/content/19/10/1722">http://genome.cshlp.org/content/19/10/1722</a> 
</li>
<li>Coccidioides posadasii :  human pathogen, 2009, Genome Res, Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives,   <a href="http://genome.cshlp.org/content/19/10/1722">http://genome.cshlp.org/content/19/10/1722</a> 
</li>
<li>Penicillium chrysogenum : 푸른곰팡이속, industrial use,  2008, Nature Biotechnology Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum,  <a href="http://www.nature.com/nbt/journal/v26/n10/full/nbt.1498.html">http://www.nature.com/nbt/journal/v26/n10/full/nbt.1498.html</a> 
</li>
<li>Penicillium marneffei : human pathogen, 2011, Eukaryotic Cell Draft Genome Sequence of Penicillium marneffei Strain PM1,  <a href="http://ec.asm.org/content/10/12/1740">http://ec.asm.org/content/10/12/1740</a> 
</li>
</ol>
        

<h3>Leotiomycetes        
</h3>
<ol>
<li>Botrytis cinerea : plant pathogen 2011 PLoS Genetics Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea  <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002230">http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002230</a> 
</li>
</ol>
        

<h3>Pezizomycetes        
</h3>
<ol>
<li>Tuber melanosporum : 송로버섯 Périgord black truffle  2010 nature Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis  <a href="http://www.nature.com/nature/journal/v464/n7291/full/nature08867.html">http://www.nature.com/nature/journal/v464/n7291/full/nature08867.html</a> 
</li>
</ol>
        

<h3>Saccharomycetes        
</h3>
<ol>
<li>Ashbya gossypii :  plant pathogen  2004 nature The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome  <a href="http://www.sciencemag.org/content/304/5668/304">http://www.sciencemag.org/content/304/5668/304</a> 
</li>
<li>Candida albicans :  human pathogen  2004 PNAS The diploid genome sequence of Candida albicans  <a href="http://www.pnas.org/content/101/19/7329">http://www.pnas.org/content/101/19/7329</a> 
</li>
<li>Candida albicans : human pathogen  2005 Genetics Sequence finishing and gene mapping for Candida albicans chromosome 7 and syntenic analysis against the Saccharomyces cerevisiae genome.  <a href="http://www.genetics.org/content/170/4/1525.long">http://www.genetics.org/content/170/4/1525.long</a> 
</li>
<li>Candida albicans :  human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida glabrata : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida tropicalis : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida parapsilosis : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida krusei : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida lusitaniae : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida guilliermondii : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Candida lusitaniae : human pathogen  2009 nature(candida 8종 해독) Evolution of pathogenicity and sexual reproduction in eight Candida genomes  <a href="http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html">http://www.nature.com/nature/journal/v459/n7247/full/nature08064.html</a> 
</li>
<li>Debaryomyces hansenii : industrial use 2012 Eukaryotic Cell Draft Genome Sequence of Salt-Tolerant Yeast Debaryomyces hansenii var. hansenii MTCC 234   <a href="http://ec.asm.org/content/11/7/961.full">http://ec.asm.org/content/11/7/961.full</a> 
</li>
<li>Hansenula polymorpha :  industrial use  2003 FEMS Yeast Research The Hansenula polymorpha (strain CBS4732) genome sequencing and analysis  <a href="http://onlinelibrary.wiley.com/doi/10.1016/S1567-1356(03)00125-9/full">http://onlinelibrary.wiley.com/doi/10.1016/S1567-1356(03)00125-9/full</a> 
</li>
<li>Lachancea (Saccharomyces) kluyveri :   plant pathogen  2009 Genome Res. Unusual composition of a yeast chromosome arm is associated with its delayed replication  <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765276/">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765276/</a> 
</li>
<li>Saccharomyces cerevisiae : industrial/model 2007 Proc Natl Acad Sci U S A. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789  <a href="http://www.pnas.org/content/104/31/12825.long">http://www.pnas.org/content/104/31/12825.long</a> 
</li>
<li>Saccharomyces cerevisiae : industrial/model 2008 PLoS Genetics A Catalog of Neutral and Deleterious Polymorphism in Yeast  <a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000183">http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000183</a> 
</li>
<li>Saccharomyces cerevisiae : industrial/model 2008 FEMS Yeast Research Comparative genome analysis of a Saccharomyces cerevisiae wine strain  <a href="http://onlinelibrary.wiley.com/doi/10.1111/j.1567-1364.2008.00434.x/abstract;jsessionid=8A70BABAA07CBDF67AFAA1AE0275FD89.d04t04?systemMessage=Wiley+Online+Library+will+be+disrupted+on+7+July+from+10%3A00-12%3A00+BST+%2805%3A00-07%3A00+EDT%29+for+essential+maintenance">http://onlinelibrary.wiley.com/doi/10.1111/j.1567-1364.2008.00434.x/abstract;jsessionid=8A70BABAA07CBDF67AFAA1AE0275FD89.d04t04?systemMessage=Wiley+Online+Library+will+be+disrupted+on+7+July+from+10%3A00-12%3A00+BST+%2805%3A00-07%3A00+EDT%29+for+essential+maintenance</a> 
</li>
<li>Saccharomyces cerevisiae : industrial/model 2009 Genome Res. Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production  <a href="http://genome.cshlp.org/content/19/12/2258.long">http://genome.cshlp.org/content/19/12/2258.long</a> 
</li>
<li>Pichia stipitis : lignin/xylose degrader  2007 Nature Biotechnology Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis  <a href="http://www.nature.com/nbt/journal/v25/n3/full/nbt1290.html">http://www.nature.com/nbt/journal/v25/n3/full/nbt1290.html</a> 
</li>
<li>Saccharomyces pastorianus : industrial, beer  2009 DNA Res Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid  <a href="http://dnaresearch.oxfordjournals.org/content/16/2/115">http://dnaresearch.oxfordjournals.org/content/16/2/115</a> 
</li>
<li>Saccharomyces cerevisiae : industrial/model 2003 nature Sequencing and comparison of yeast species to identify genes and regulatory elements  <a href="http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html">http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html</a> 
</li>
<li>Saccharomyces paradoxus :  2003 nature Sequencing and comparison of yeast species to identify genes and regulatory elements  <a href="http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html">http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html</a> 
</li>
<li>Saccharomyces mikatae :  2003 nature Sequencing and comparison of yeast species to identify genes and regulatory elements  <a href="http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html">http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html</a> 
</li>
<li>Saccharomyces bayanus :  2003 nature Sequencing and comparison of yeast species to identify genes and regulatory elements  <a href="http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html">http://www.nature.com/nature/journal/v423/n6937/full/nature01644.html</a> 
</li>
<li>Yarrowia lipolytica : industrial use 2004 nature Genome evolution in yeasts  <a href="http://www.nature.com/nature/journal/v430/n6995/full/nature02579.html">http://www.nature.com/nature/journal/v430/n6995/full/nature02579.html</a> 
</li>
</ol>
 

        

<h3>Schizosaccharomycetes        
</h3>
<ol>
<li>Schizosaccharomyces pombe :  model eukaryote  2002 nature The genome sequence of Schizosaccharomyces pombe V. Wood et al <a href="http://www.nature.com/nature/journal/v415/n6874/full/nature724.html">http://www.nature.com/nature/journal/v415/n6874/full/nature724.html</a> 
</li>
</ol>
        

<h3>Sordariomycetes        
</h3>
<ol>
<li>Fusarium oxysporum : human/plant pathogen 2010 nature(Fusarium 3종) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium Li-Jun Ma et al <a href="http://www.nature.com/nature/journal/v464/n7287/full/nature08850.html">http://www.nature.com/nature/journal/v464/n7287/full/nature08850.html</a> 
</li>
<li>Fusarium graminearum : human/plant pathogen 2010 nature(Fusarium 3종) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium Li-Jun Ma et al <a href="http://www.nature.com/nature/journal/v464/n7287/full/nature08850.html">http://www.nature.com/nature/journal/v464/n7287/full/nature08850.html</a> 
</li>
<li>Fusarium verticillioides :  human/plant pathogen 2010 nature(Fusarium 3종) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium Li-Jun Ma et al <a href="http://www.nature.com/nature/journal/v464/n7287/full/nature08850.html">http://www.nature.com/nature/journal/v464/n7287/full/nature08850.html</a> 
</li>
<li>Fusarium graminearum :  2007 Science The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization Cuomo CA et al <a href="http://www.sciencemag.org/content/317/5843/1400">http://www.sciencemag.org/content/317/5843/1400</a> 
</li>
<li>Grosmannia clavigera : plant pathogen  2011 PNAS Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen Scott DiGuistini et al <a href="http://www.pnas.org/content/early/2011/01/18/1011289108">http://www.pnas.org/content/early/2011/01/18/1011289108</a> 
</li>
<li>Magnaporthe grisea : plant pathogen 2005 nature The genome sequence of the rice blast fungus Magnaporthe grisea Ralph A. Dean et al <a href="http://www.nature.com/nature/journal/v434/n7036/full/nature03449.html">http://www.nature.com/nature/journal/v434/n7036/full/nature03449.html</a> 
</li>
<li>Nectria haematococca : plastic/pest./lignin degrader  2009 PLoS Genetics The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion Jeffrey J. Coleman et al <a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000618">http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000618</a> 
</li>
<li>Podospora anserina :  2008 Genome Biology The genome sequence of the model ascomycete fungus Podospora anserina Eric Espagne et al <a href="http://genomebiology.com/content/9/5/R77">http://genomebiology.com/content/9/5/R77</a> 
</li>
<li>Sporotrichum thermophile : thermophilic cellulose degrader       
</li>
<li>Myceliophthora thermophila :  2011 Nature Biotechnology Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris Randy M Berka et al <a href="http://www.nature.com/nbt/journal/v29/n10/full/nbt.1976.html">http://www.nature.com/nbt/journal/v29/n10/full/nbt.1976.html</a> 
</li>
<li>Thielavia terrestris : model thermophile/industrial  2011 Nature Biotechnology Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris Randy M Berka et al <a href="http://www.nature.com/nbt/journal/v29/n10/full/nbt.1976.html">http://www.nature.com/nbt/journal/v29/n10/full/nbt.1976.html</a>     
</li>
<li>Trichoderma reesei : biomass-degrading 2008 Nature Biotechnology Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) Diego Martinez et al <a href="http://www.nature.com/nbt/journal/v26/n5/full/nbt1403.html">http://www.nature.com/nbt/journal/v26/n5/full/nbt1403.html</a> 
</li>
</ol>
        

<h2>Basidiomycota        
</h2>
<h3>Agaricomycetes        
</h3>
 

<ol>
<li>Auricularia delicata  : 2012 science The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 funal genomes Floudas, et al. <a href="http://www.sciencemag.org/content/336/6089/1715.long">http://www.sciencemag.org/content/336/6089/1715.long</a> 
</li>
<li>Coprinopsis cinerea : model organism for multicellular fungi 2010 PNAS Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)  Jason E. Stajich et al <a href="http://www.pnas.org/content/107/26/11889">http://www.pnas.org/content/107/26/11889</a> 
</li>
<li>Laccaria bicolor :  mycorrhiza  2007 nature The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis F. Martin et al <a href="http://www.nature.com/nature/journal/v452/n7183/full/nature06556.html">http://www.nature.com/nature/journal/v452/n7183/full/nature06556.html</a> 
</li>
<li>Moniliophthora perniciosa :  2008 BMC Genomics  A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao Jorge MC Mondego et al <a href="http://www.biomedcentral.com/1471-2164/9/548">http://www.biomedcentral.com/1471-2164/9/548</a> 
</li>
<li>Phanerochaete chrysosporium :   mycoremediation(균류정화법) 2004 Nature Biotechnology Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 Diego Martinez et al <a href="http://www.nature.com/nbt/journal/v22/n6/full/nbt967.html">http://www.nature.com/nbt/journal/v22/n6/full/nbt967.html</a> 
</li>
<li>Postia placenta :  cellulose degrader  2009 PNAS Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion Diego Martinez et al <a href="http://www.pnas.org/content/106/6/1954">http://www.pnas.org/content/106/6/1954</a> 
</li>
<li>Schizophyllum commune :  model mushroom 2010 Nature Biotechnology Genome sequence of the model mushroom Schizophyllum commune Robin A Ohm et al <a href="http://www.nature.com/nbt/journal/v28/n9/full/nbt.1643.html">http://www.nature.com/nbt/journal/v28/n9/full/nbt.1643.html</a> 
</li>
<li>Serpula lacrymans : plant pathogen 2011 Science The Plant Cell Wall–Decomposing Machinery Underlies the Functional Diversity of Forest Fungi Daniel C. Eastwood et al <a href="http://www.sciencemag.org/content/333/6043/762">http://www.sciencemag.org/content/333/6043/762</a> 
</li>
</ol>
        

<h3>Pucciniomycetes        
</h3>
<ol>
<li>Puccinia graminis f. sp. Tritici : plant pathogen  2011 PNAS Obligate biotrophy features unraveled by the genomic analysis of rust fungi Sébastien Duplessis et al <a href="http://www.pnas.org/content/108/22/9166">http://www.pnas.org/content/108/22/9166</a> 
</li>
<li>Cryptococcus neoformans : human pathogen 2005 Science The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans Brendan J. Loftus et al <a href="http://www.sciencemag.org/content/307/5713/1321">http://www.sciencemag.org/content/307/5713/1321</a> 
</li>
</ol>
        

<h3>Ustilaginomycetes        
</h3>
<ol>
<li>Malassezia globosa : human/plant pathogen 2007 PNAS Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens  Jun Xu et al <a href="http://www.pnas.org/content/104/47/18730">http://www.pnas.org/content/104/47/18730</a> 
</li>
<li>Malassezia restricta : dandruff-associated  2007 PNAS Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens  Jun Xu et al <a href="http://www.pnas.org/content/104/47/18730">http://www.pnas.org/content/104/47/18730</a> 
</li>
<li>Sporisorium rellianum : plant pathogen  2010 Science Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison Jan Schirawski et al <a href="http://www.sciencemag.org/content/330/6010/1546">http://www.sciencemag.org/content/330/6010/1546</a> 
</li>
<li>Ustilago maydis : plant pathogen  2006 nature Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis Jörg Kämper et al <a href="http://www.nature.com/nature/journal/v444/n7115/full/nature05248.html">http://www.nature.com/nature/journal/v444/n7115/full/nature05248.html</a> 
</li>
</ol>
        

<h2>Microsporidia        
</h2>
<ol>
<li>Encephalitozoon cuniculi : human pathogen  2001 nature Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi Michaël D. Katinka et al <a href="http://www.nature.com/nature/journal/v414/n6862/full/414450a0.html">http://www.nature.com/nature/journal/v414/n6862/full/414450a0.html</a> 
</li>
<li>Encephalitozoon intestinalis : human pathogen 2010 Nature Communications The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis Nicolas Corradi et al <a href="http://www.nature.com/ncomms/journal/v1/n6/full/ncomms1082.html">http://www.nature.com/ncomms/journal/v1/n6/full/ncomms1082.html</a> 
</li>
<li>Enterocytozoon bieneusi : human pathogen particularly in the context of HIV infection  2009 PLoS Pathogens Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi Donna E. Akiyoshi et al <a href="http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1000261">http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1000261</a> 
</li>
<li>Nosema ceranae : honey bee pathogen  2009 PLoS Pathogens Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees R. Scott Cornman et al <a href="http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1000466">http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1000466</a> 
</li>
<li>Octosporea bayeri : Daphnia pathogen  2009 Genome Biology Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions Nicolas Corradi et al <a href="http://genomebiology.com/2009/10/10/R106">http://genomebiology.com/2009/10/10/R106</a> 
</li>
</ol>
<h2>        
</h2>
<h2>Zygomycota        
</h2>
<ol>
<li>Rhizopus oryzae : human pathogen  2009 PLoS Genetics Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole genome duplication Li-Jun Ma et al <a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000549">http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000549</a> 
</li>
<li>Mortierella alpina : commercial source of arachidonic acid  2011 PLoS One Genome characterization of the oleaginous fungus Mortierella alpina Lei Wang et al <a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0028319">http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0028319</a> 
</li>
</ol>

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