| Year
|
Title
|
Publisher
|
|
|
|
|
| 2020
|
The whale shark genome reveals how genomic and physiological properties scale with size
|
PNAS
|
|
Korean Genome Project: 2094 Korean personal genomes with clinical information
|
ScienceAdvances
|
|
The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome Sequences
|
Genome Biology and Evolution
|
|
Decoding a Highly Mixed Kazakh Genome
|
Human Genetics
|
|
Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity
|
Molecules and Cells
|
|
|
|
|
| 2019
|
Brca2 Abrogation Engages With the Alternative Lengthening of Telomeres via Break-Induced Replication
|
The FEBS Journal
|
|
Chromosome-scale Assembly Comparison of the Korean Reference Genome KOREF From PromethION and PacBio With Hi-C Mapping Information
|
GigaScience
|
|
Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment
|
Anticancer Research
|
|
Comparison of Exercise Electrocardiography and Magnetocardiography for Detection of Coronary Artery Disease Using ST-segment Fluctuation Score
|
IOS Press
|
|
Depression and Suicide Risk Prediction Models Using Blood-Derived Multi-Omics Data
|
Translational Psychiatry
|
|
The Draft Genome of an Octocoral, Dendronephthya Gigantea
|
Genome Biology and Evolution
|
|
The Galleria Mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax
|
Cell Reports
|
|
The Genome of the Giant Nomura's Jellyfish Sheds Light on the Early Evolution of Active Predation
|
BMC Biology
|
| Investigation of Hanwoo-specific Structural Variations Using Whole-Genome Sequencing Data
|
Genes & Genomics
|
| Raptor Genomes Reveal Evolutionary Signatures of Predatory and Nocturnal Lifestyles
|
Genome Biology
|
| Sequencing and Analysis of the Whole Genome of Indian Gujarati Male
|
Genomics
|
|
|
|
|
| 2018
|
Genomic Analysis Reveals Secondary Glioblastoma After Radiotherapy in a Subset of Recurrent Medulloblastomas
|
Acta Neuropathologica
|
| Genomic Structure of the Native Inhabitants of Peninsular Malaysia and North Borneo Suggests Complex Human Population History in Southeast Asia
|
Human Genetics
|
| Grading System for Periodontitis by Analyzing Levels of Periodontal Pathogens in Saliva
|
PLoS One
|
| KoVariome: Korean National Standard Reference Variome Database of Whole Genomes With Comprehensive SNV, Indel, CNV, and SV Analyses
|
Scientific Reports
|
| Magnetocardiography Scoring System to Predict the Presence of Obstructive Coronary Artery Disease
|
Clinical Hemorheology and Microcirculation
|
| Whole Genome Sequencing and Bioinformatics Analysis of Two Egyptian Genomes
|
Gene
|
|
|
|
|
2017
|
Analysis of the FGF Gene Family Provides Insights Into Aquatic Adaptation in Cetaceans
|
Scientific Reports
|
| Corrigendum: An Ethnically Relevant Consensus Korean Reference Genome Is a Step Towards Personal Reference Genomes
|
Nature Communications
|
| Genome-wide Data From Two Early Neolithic East Asian Individuals Dating to 7700 Years Ago
|
ScienceAdvances
|
| Myotis Rufoniger Genome Sequence and Analyses: M. Rufoniger's Genomic Feature and the Decreasing Effective Population Size of Myotis Bats
|
PLoS One
|
| Perspectives Provided by Leopard and Other Cat Genomes: How Diet Determined the Evolutionary History of Carnivores, Omnivores, and Herbivores
|
BMB Reports
|
|
|
|
|
| 2016
|
An Adaptive Detection Method for Fetal Chromosomal Aneuploidy Using Cell-Free DNA From 447 Korean Women
|
BMC Medical Genomics
|
| Comparison of Carnivore, Omnivore, and Herbivore Mammalian Genomes With a New Leopard Assembly
|
Genome Biology
|
| Comparison of Two High-Throughput Semiconductor Chip Sequencing Platforms in Noninvasive Prenatal Testing for Down Syndrome in Early Pregnancy
|
BMC Medical Genomics
|
|
An Ethnically Relevant Consensus Korean Reference Genome Is a Step Towards Personal Reference Genomes
|
Nature Communications
|
| The Genetics of an Early Neolithic Pastoralist From the Zagros, Iran
|
Scientific Reports
|
| Genomes of Coral Dinoflagellate Symbionts Highlight Evolutionary Adaptations Conducive to a Symbiotic Lifestyle
|
Scientific Reports
|
| RNA-Seq Analysis Reveals New Evidence for Inflammation-Related Changes in Aged Kidney
|
Oncotarget
|
| Short-term Calorie Restriction Ameliorates Genomewide, Age-Related Alterations in DNA Methylation
|
Aging Cell
|
|
|
|
|
| 2015
|
Ancient Ethiopian Genome Reveals Extensive Eurasian Admixture Throughout the African Continent
|
Science
|
| Characterization of cetacean Numt and its application into cetacean phylogeny
|
Genes & Genomics
|
| The First Whole Genome and Transcriptome of the Cinereous Vulture Reveals Adaptation in the Gastric and Immune Defense Systems and Possible Convergent Evolution Between the Old and New World Vultures
|
Genome Biology
|
| Genome-wide Analysis of DNA Methylation Before-And After Exercise in the Thoroughbred Horse With MeDIP-Seq
|
Molecules and Cells
|
| Genomic Legacy of the African Cheetah, Acinonyx Jubatus
|
Genome Biology
|
| HEpD: A Database Describing Epigenetic Differences Between Thoroughbred and Jeju Horses
|
Gene
|
| HExDB: a database for epigenetic changes occurring after horse exercise
|
Genes & Genomics
|
| Insights Into the Evolution of Longevity From the Bowhead Whale Genome
|
Cell Reports
|
| Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects
|
Cancer Informatics
|
| SLC15A2 Genomic Variation Is Associated With the Extraordinary Response of Sorafenib Treatment: Whole-Genome Analysis in Patients With Hepatocellular Carcinoma
|
Oncotarget
|
| Whole Genome Sequencing of an Ethnic Pathan (Pakhtun) From the North-West of Pakistan
|
BMC Genomics
|
|
|
|
|
| 2014
|
The Feasibility Study of Non-Invasive Fetal Trisomy 18 and 21 Detection With Semiconductor Sequencing Platform
|
PLoS One
|
| Genome-wide Analysis of DNA Methylation Patterns in Horse
|
BMC Genomics
|
| Genomic Profile Analysis of Diffuse-Type Gastric Cancers
|
Genome Biology
|
| Identification and Characterization of MicroRNAs in Normal Equine Tissues by Next Generation Sequencing
|
PLoS One
|
| Minke Whale Genome and Aquatic Adaptation in Cetaceans
|
Nature Genetics
|
| New Lung Cancer Panel for High-Throughput Targeted Resequencing
|
Genomics & Informatics
|
| PPP1R1B-STARD3 Chimeric Fusion Transcript in Human Gastric Cancer Promotes Tumorigenesis Through Activation of PI3K/AKT Signaling
|
Oncogene
|
| Whole-genome Analysis of a Patient With Early-Stage Small-Cell Lung Cancer
|
Pharmacogenomics
|
| Comprehensive Genome- And Transcriptome-Wide Analyses of Mutations Associated With Microsatellite Instability in Korean Gastric Cancers
|
BMC Genomics
|
| Whole Genome Sequence and Analysis of the Marwari Horse Breed and Its Genetic Origin
|
BMC Genomics
|
|
|
|
|
| 2013
|
Comprehensive Genome- And Transcriptome-Wide Analyses of Mutations Associated With Microsatellite Instability in Korean Gastric Cancers
|
Genome Research
|
| The Genetic Basis of White Tigers
|
Current Biology
|
| iAnn: An Event Sharing Platform for the Life Sciences
|
Bioinformatics
|
| Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse
|
DNA Research
|
| The Tiger Genome and Comparative Analysis With Lion and Snow Leopard Genomes
|
Nature Communications
|
| Whole genome comparison of donor and cloned dogs
|
Scientific Reports
|
|
|
|
|
| 2012
|
De Novo Transcriptome Sequencing of Momordica Cochinchinensis to Identify Genes Involved in the Carotenoid Biosynthesis
|
Plant Molecular Biology
|
| Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion
|
PNAS
|
| Low Budget Analysis of Direct-To-Consumer Genomic Testing Familial Data
|
F1000Research
|
| MetaBase--the Wiki-Database of Biological Databases
|
Nucleic Acids Research
|
| A Public Resource Facilitating Clinical Use of Genomes
|
PNAS
|
| Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
|
BMC Genomics
|
|
|
|
|
| 2011
|
BetaDock: Shape-Priority Docking Method Based on Beta-Complex
|
Journal of Biomolecular Structure and Dynamics
|
| Gene Expression Pattern in Transmitochondrial Cytoplasmic Hybrid Cells Harboring Type 2 Diabetes-Associated Mitochondrial DNA Haplogroups
|
PLoS One
|
| Identification of Close Relatives in the HUGO Pan-Asian SNP Database
|
PLoS One
|
| Liverome: A Curated Database of Liver Cancer-Related Gene Signatures With Self-Contained Context Information
|
BMC Genomics
|
| Mutational Hotspots in the Mitochondrial Genome of Lung Cancer
|
Biochemical and Biophysical Research Communications
|
| PanSNPdb: The Pan-Asian SNP Genotyping Database
|
PLoS One
|
| Population Genetic Structure of Peninsular Malaysia Malay Sub-Ethnic Groups
|
PLoS One
|
|
|
|
|
| 2010
|
Alpha-glucosidase Folding During Urea Denaturation: Enzyme Kinetics and Computational Prediction
|
Applied Biochemistry and Biotechnology
|
| Differential Evolutionary Rates of Neuronal Transcriptome in Aplysia Kurodai and Aplysia Californica as a Tool for Gene Mining
|
Journal of Neurogenetics
|
| The Effect of Trifluoroethanol on Tyrosinase Activity and Conformation: Inhibition Kinetics and Computational Simulations
|
Applied Biochemistry and Biotechnology
|
| Gene Flow Between the Korean Peninsula and Its Neighboring Countries
|
PLoS One
|
| Kinetics of Zn(2+)-induced Brain Type Creatine Kinase Unfolding and Aggregation
|
Applied Biochemistry and Biotechnology
|
| PDBWiki: Added Value Through Community Annotation of the Protein Data Bank
|
Database
|
| A Proposal for the Revision of Molecular Boundary Typology
|
Journal of Biomolecular Structure and Dynamics
|
| Protein Network Prediction and Topological Analysis in Leishmania Major as a Tool for Drug Target Selection
|
BMC Bioinformatics
|
| Sphericity of a Protein via the Beta-Complex
|
Journal of Molecular Graphs and Modelling
|
| Structural Analysis and Inhibitory Kinetics of Brain Type Creatine Kinase by Sodium Dodecyl Sulfate
|
Applied Biochemistry and Biotechnology
|
| Systematic Cyanobacterial Membrane Proteome Analysis by Combining Acid Hydrolysis and Digestive Enzymes With Nano-Liquid chromatography-Fourier Transform Mass Spectrometry
|
Journal of Chromatography A
|
| Whole-genome Sequencing and Intensive Analysis of the Undomesticated Soybean (Glycine Soja Sieb. And Zucc.) Genome
|
PNAS
|
|
|
|
|
| 2009
|
BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources
|
BMC Genomics
|
| COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System
|
BMC Genomics
|
| DNA microarray analyses and interactomic predictions for atopic dermatitis
|
Journal of Dermatological Science
|
| Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses
|
Journal of Dermatological Science
|
| The effects of acrylamide on brain creatine kinase: inhibition kinetics and computational docking simulation
|
International Journal of Biological Macromolecules
|
| The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group
|
Genome Research
|
| Gevab: a prototype genome variation analysis browsing server
|
BMC Bioinformatics
|
| The Korean Bird Information System (KBIS) through open and public participation
|
BMC Bioinformatics
|
| Mapping human genetic diversity in Asia
|
Science
|
| MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis
|
BMC Genomics
|
| MitoVariome: a variome database of human mitochondrial DNA
|
BMC Genomics
|
|
PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs
|
BMC Genomics
|
| Planning the human variome project: the Spain report
|
Human Mutation
|
| Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses
|
Journal of Dermatological Science
|
| PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440
|
BMC Genomics
|
| ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database
|
Human Mutation
|
| Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications
|
Communicative & Integrative Biology
|
|
|
|
|
| 2008
|
Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries
|
Bioinformatics
|
| Cyanobacterial hybrid kinase Sll0043 regulates phototaxis by suppressing pilin and twitching motility protein
|
Journal of Microbiology
|
| The effect of histidine residue modification on tyrosinase activity and conformation: inhibition kinetics and computational prediction
|
Journal of Biomolecular Structure and Dynamics
|
| Identification of gene-related Korean patents and construction of a database server for Korean patent sequences
|
Biotechnology and Bioprocess Engineering
|
| An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
|
BMC Bioinformatics
|
| An integrated Korean biodiversity and genetic information retrieval system
|
BMC Bioinformatics
|
| MassNet: a functional annotation service for protein mass spectrometry data
|
Nucleic Acids Research
|
| Personal Genomics, Bioinformatics, and Variomics
|
Genomics & Informatics
|
| Pocket extraction on proteins via the Voronoi diagram of spheres
|
Journal of Molecular Graphs and Modelling
|
| Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service
|
BMC Bioinformatics
|
| Prediction and evaluation of protein-protein interaction in keratinocyte differentiation
|
Biochemical and Biophysical Research Communications
|
| Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics
|
Proteomics - Clinical Applications
|
| SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions
|
BMC Bioinformatics
|
| Structural Bioinformatics Analysis of Disease-related Mutations
|
Genomics & Informatics
|
| SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803
|
BMC Bioinformatics
|
| Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai
|
PNAS
|
|
|
|
|
| 2007
|
Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases
|
Genetics & Informatics
|
| CONSORF: a consensus prediction system for prokaryotic coding sequences
|
Bioinformatics
|
| Genomic distribution of simple sequence repeats in Brassica rapa
|
Molecules and Cells
|
| GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data
|
Bioinformation
|
| Impact of transcriptional properties on essentiality and evolutionary rate
|
Genetics
|
| Multi-Resolution Protein Model
|
Lecture Notes in Computer Science
|
|
|
|
|
| 2006
|
BioCC: An Openfree Hypertext Bio Community Cluster for Biology
|
Genomics & Informatics
|
| Developmental rate and ploidy of embryos produced by nuclear transfer with different activation treatments in cattle
|
Animal Reproduction Science
|
| Functional annotation and analysis of Korean patented biological sequences using bioinformatics
|
Molecules and Cells
|
| Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information
|
Nucleic Acids Research
|
| Parameter selection of pocket extraction algorithm using interaction interface
|
Journal of Zhejiang University - SCIENCE A
|
| Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa
|
Plant Cell
|
|
|
|
|
| 2005
|
Architecture of basic building blocks in protein and domain structural interaction networks
|
Bioinformatics
|
| BioCovi: A Visualization Service for Comparative Genomics Analysis
|
Genomics & Informatics
|
| BioSubroutine: an Open Web Server for Bioinformatics Algorithms and Subroutines
|
Genomics & Informatics
|
| Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)
|
Bioinformatics
|
| Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis
|
Japan Journal of Industrial and Applied Mathematics
|
| HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis
|
Genomics & Informatics
|
| A protein domain interaction interface database: InterPare
|
BMC Informatics
|
| PSIbase: a database of Protein Structural Interactome map (PSIMAP)
|
Bioinformatics
|
|
|
|
|
| 2004
|
The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions
|
BMC Genomics
|
| The Atom of Evolution
|
Genomics & Informatics
|
| High Correlation between Alu Elements and the Conversion of 3' UTR of mRNAs Processed Pseudogenes
|
Genomics & Informatics
|
| HPID: the Human Protein Interaction Database
|
Bioinformatics
|
| Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP)
|
Bioinformatics
|
| Using convex hulls to extract interaction interfaces from known structures
|
Bioinformatics
|
|
|
|
|
| 2003
|
Biological Network Evolution Hypothesis Applied to Protein Structural Interactome
|
Genomics & Informatics
|
| Challenges and New Approaches in Genomics and Bioinformatics
|
Genomics & Informatics
|
| Different activation treatments for successful development of bovine oocytes following intracytoplasmic sperm injection
|
Zygote
|
| Predicting Protein Interactions in Human by Homologous Interactions in Yeast
|
Lecture Notes in Computer Science
|
| Visualisation and graph-theoretic analysis of a large-scale protein structural interactome
|
BMC Bioinformatics
|
| Visualization and analysis of protein interactions
|
Bioinformatics
|
|
|
|
|
| 2002
|
InterViewer: Dynamic Visualization of Protein-Protein Interactions
|
Lecture Notes in Computer Science
|
| Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair
|
Genomic Informatics
|
| Protein Interactions in the Whole Human Genome
|
Genome Informatics
|
| Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear
|
BMC Cell Biology
|
|
|
|
|
| 2001
|
Conservation of protein interaction network in evolution
|
Genome Informatics
|
| A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3
|
Nucleic Acids Research
|
| Generating protein interaction maps from incomplete data: application to fold assignment
|
Bioinformatics
|
| An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server
|
Genome Informatics
|
| Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast
|
Journal of Molecular Biology
|
| PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information
|
Nucleic Acids Research
|
| Protein Classification Comparison Server
|
Genome Informatics
|
|
|
|
|
| 2000
|
DaliLite workbench for protein structure comparison
|
Bioinformatics
|
| Estimating the significance of sequence order in protein secondary structure and prediction
|
Bioinformatics
|
| Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL
|
Bioinformatics
|
| RSDB: representative protein sequence databases have high information content
|
Bioinformatics
|
| Sequence search algorithm assessment and testing toolkit (SAT)
|
Bioinformatics
|
|
|
|
|
| 1998
|
DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins
|
Bioinformatics
|
| Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
|
Journal of Molecular Biology
|
| Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
|
PNAS
|
|
|
|
|
| 1997
|
Intermediate sequences increase the detection of homology between sequences
|
Journal of Molecular Biology
|
|
|
|
|
| 1996
|
Protein structure prediction: playing the fold
|
Trends in Biochemical Sciences
|
| Update on protein structure prediction: results of the 1995 IRBM workshop
|
Folding and Design
|
|
|
|
|
| 1995
|
Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials
|
Proteins
|
