Our Publications

Year	Title	Publisher
2020	The whale shark genome reveals how genomic and physiological properties scale with size	PNAS
	Korean Genome Project: 2094 Korean personal genomes with clinical information	ScienceAdvances
	The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome Sequences	Genome Biology and Evolution
	Decoding a Highly Mixed Kazakh Genome	Human Genetics
	Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity	Molecules and Cells
2019	Brca2 Abrogation Engages With the Alternative Lengthening of Telomeres via Break-Induced Replication	The FEBS Journal
	Chromosome-scale Assembly Comparison of the Korean Reference Genome KOREF From PromethION and PacBio With Hi-C Mapping Information	GigaScience
	Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment	Anticancer Research
	Comparison of Exercise Electrocardiography and Magnetocardiography for Detection of Coronary Artery Disease Using ST-segment Fluctuation Score	IOS Press
	Depression and Suicide Risk Prediction Models Using Blood-Derived Multi-Omics Data	Translational Psychiatry
	The Draft Genome of an Octocoral, Dendronephthya Gigantea	Genome Biology and Evolution
	The Galleria Mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax	Cell Reports
	The Genome of the Giant Nomura's Jellyfish Sheds Light on the Early Evolution of Active Predation	BMC Biology
	Investigation of Hanwoo-specific Structural Variations Using Whole-Genome Sequencing Data	Genes & Genomics
	Raptor Genomes Reveal Evolutionary Signatures of Predatory and Nocturnal Lifestyles	Genome Biology
	Sequencing and Analysis of the Whole Genome of Indian Gujarati Male	Genomics
2018	Genomic Analysis Reveals Secondary Glioblastoma After Radiotherapy in a Subset of Recurrent Medulloblastomas	Acta Neuropathologica
	Genomic Structure of the Native Inhabitants of Peninsular Malaysia and North Borneo Suggests Complex Human Population History in Southeast Asia	Human Genetics
	Grading System for Periodontitis by Analyzing Levels of Periodontal Pathogens in Saliva	PLoS One
	KoVariome: Korean National Standard Reference Variome Database of Whole Genomes With Comprehensive SNV, Indel, CNV, and SV Analyses	Scientific Reports
	Magnetocardiography Scoring System to Predict the Presence of Obstructive Coronary Artery Disease	Clinical Hemorheology and Microcirculation
	Whole Genome Sequencing and Bioinformatics Analysis of Two Egyptian Genomes	Gene
2017	Analysis of the FGF Gene Family Provides Insights Into Aquatic Adaptation in Cetaceans	Scientific Reports
	Corrigendum: An Ethnically Relevant Consensus Korean Reference Genome Is a Step Towards Personal Reference Genomes	Nature Communications
	Genome-wide Data From Two Early Neolithic East Asian Individuals Dating to 7700 Years Ago	ScienceAdvances
	Myotis Rufoniger Genome Sequence and Analyses: M. Rufoniger's Genomic Feature and the Decreasing Effective Population Size of Myotis Bats	PLoS One
	Perspectives Provided by Leopard and Other Cat Genomes: How Diet Determined the Evolutionary History of Carnivores, Omnivores, and Herbivores	BMB Reports
2016	An Adaptive Detection Method for Fetal Chromosomal Aneuploidy Using Cell-Free DNA From 447 Korean Women	BMC Medical Genomics
	Comparison of Carnivore, Omnivore, and Herbivore Mammalian Genomes With a New Leopard Assembly	Genome Biology
	Comparison of Two High-Throughput Semiconductor Chip Sequencing Platforms in Noninvasive Prenatal Testing for Down Syndrome in Early Pregnancy	BMC Medical Genomics
	An Ethnically Relevant Consensus Korean Reference Genome Is a Step Towards Personal Reference Genomes	Nature Communications
	The Genetics of an Early Neolithic Pastoralist From the Zagros, Iran	Scientific Reports
	Genomes of Coral Dinoflagellate Symbionts Highlight Evolutionary Adaptations Conducive to a Symbiotic Lifestyle	Scientific Reports
	RNA-Seq Analysis Reveals New Evidence for Inflammation-Related Changes in Aged Kidney	Oncotarget
	Short-term Calorie Restriction Ameliorates Genomewide, Age-Related Alterations in DNA Methylation	Aging Cell
2015	Ancient Ethiopian Genome Reveals Extensive Eurasian Admixture Throughout the African Continent	Science
	Characterization of cetacean Numt and its application into cetacean phylogeny	Genes & Genomics
	The First Whole Genome and Transcriptome of the Cinereous Vulture Reveals Adaptation in the Gastric and Immune Defense Systems and Possible Convergent Evolution Between the Old and New World Vultures	Genome Biology
	Genome-wide Analysis of DNA Methylation Before-And After Exercise in the Thoroughbred Horse With MeDIP-Seq	Molecules and Cells
	Genomic Legacy of the African Cheetah, Acinonyx Jubatus	Genome Biology
	HEpD: A Database Describing Epigenetic Differences Between Thoroughbred and Jeju Horses	Gene
	HExDB: a database for epigenetic changes occurring after horse exercise	Genes & Genomics
	Insights Into the Evolution of Longevity From the Bowhead Whale Genome	Cell Reports
	Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects	Cancer Informatics
	SLC15A2 Genomic Variation Is Associated With the Extraordinary Response of Sorafenib Treatment: Whole-Genome Analysis in Patients With Hepatocellular Carcinoma	Oncotarget
	Whole Genome Sequencing of an Ethnic Pathan (Pakhtun) From the North-West of Pakistan	BMC Genomics
2014	The Feasibility Study of Non-Invasive Fetal Trisomy 18 and 21 Detection With Semiconductor Sequencing Platform	PLoS One
	Genome-wide Analysis of DNA Methylation Patterns in Horse	BMC Genomics
	Genomic Profile Analysis of Diffuse-Type Gastric Cancers	Genome Biology
	Identification and Characterization of MicroRNAs in Normal Equine Tissues by Next Generation Sequencing	PLoS One
	Minke Whale Genome and Aquatic Adaptation in Cetaceans	Nature Genetics
	New Lung Cancer Panel for High-Throughput Targeted Resequencing	Genomics & Informatics
	PPP1R1B-STARD3 Chimeric Fusion Transcript in Human Gastric Cancer Promotes Tumorigenesis Through Activation of PI3K/AKT Signaling	Oncogene
	Whole-genome Analysis of a Patient With Early-Stage Small-Cell Lung Cancer	Pharmacogenomics
	Comprehensive Genome- And Transcriptome-Wide Analyses of Mutations Associated With Microsatellite Instability in Korean Gastric Cancers	BMC Genomics
	Whole Genome Sequence and Analysis of the Marwari Horse Breed and Its Genetic Origin	BMC Genomics
2013	Comprehensive Genome- And Transcriptome-Wide Analyses of Mutations Associated With Microsatellite Instability in Korean Gastric Cancers	Genome Research
	The Genetic Basis of White Tigers	Current Biology
	iAnn: An Event Sharing Platform for the Life Sciences	Bioinformatics
	Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse	DNA Research
	The Tiger Genome and Comparative Analysis With Lion and Snow Leopard Genomes	Nature Communications
	Whole genome comparison of donor and cloned dogs	Scientific Reports
2012	De Novo Transcriptome Sequencing of Momordica Cochinchinensis to Identify Genes Involved in the Carotenoid Biosynthesis	Plant Molecular Biology
	Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion	PNAS
	Low Budget Analysis of Direct-To-Consumer Genomic Testing Familial Data	F1000Research
	MetaBase--the Wiki-Database of Biological Databases	Nucleic Acids Research
	A Public Resource Facilitating Clinical Use of Genomes	PNAS
	Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq	BMC Genomics
2011	BetaDock: Shape-Priority Docking Method Based on Beta-Complex	Journal of Biomolecular Structure and Dynamics
	Gene Expression Pattern in Transmitochondrial Cytoplasmic Hybrid Cells Harboring Type 2 Diabetes-Associated Mitochondrial DNA Haplogroups	PLoS One
	Identification of Close Relatives in the HUGO Pan-Asian SNP Database	PLoS One
	Liverome: A Curated Database of Liver Cancer-Related Gene Signatures With Self-Contained Context Information	BMC Genomics
	Mutational Hotspots in the Mitochondrial Genome of Lung Cancer	Biochemical and Biophysical Research Communications
	PanSNPdb: The Pan-Asian SNP Genotyping Database	PLoS One
	Population Genetic Structure of Peninsular Malaysia Malay Sub-Ethnic Groups	PLoS One
2010	Alpha-glucosidase Folding During Urea Denaturation: Enzyme Kinetics and Computational Prediction	Applied Biochemistry and Biotechnology
	Differential Evolutionary Rates of Neuronal Transcriptome in Aplysia Kurodai and Aplysia Californica as a Tool for Gene Mining	Journal of Neurogenetics
	The Effect of Trifluoroethanol on Tyrosinase Activity and Conformation: Inhibition Kinetics and Computational Simulations	Applied Biochemistry and Biotechnology
	Gene Flow Between the Korean Peninsula and Its Neighboring Countries	PLoS One
	Kinetics of Zn(2+)-induced Brain Type Creatine Kinase Unfolding and Aggregation	Applied Biochemistry and Biotechnology
	PDBWiki: Added Value Through Community Annotation of the Protein Data Bank	Database
	A Proposal for the Revision of Molecular Boundary Typology	Journal of Biomolecular Structure and Dynamics
	Protein Network Prediction and Topological Analysis in Leishmania Major as a Tool for Drug Target Selection	BMC Bioinformatics
	Sphericity of a Protein via the Beta-Complex	Journal of Molecular Graphs and Modelling
	Structural Analysis and Inhibitory Kinetics of Brain Type Creatine Kinase by Sodium Dodecyl Sulfate	Applied Biochemistry and Biotechnology
	Systematic Cyanobacterial Membrane Proteome Analysis by Combining Acid Hydrolysis and Digestive Enzymes With Nano-Liquid chromatography-Fourier Transform Mass Spectrometry	Journal of Chromatography A
	Whole-genome Sequencing and Intensive Analysis of the Undomesticated Soybean (Glycine Soja Sieb. And Zucc.) Genome	PNAS
2009	BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources	BMC Genomics
	COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System	BMC Genomics
	DNA microarray analyses and interactomic predictions for atopic dermatitis	Journal of Dermatological Science
	Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses	Journal of Dermatological Science
	The effects of acrylamide on brain creatine kinase: inhibition kinetics and computational docking simulation	International Journal of Biological Macromolecules
	The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group	Genome Research
	Gevab: a prototype genome variation analysis browsing server	BMC Bioinformatics
	The Korean Bird Information System (KBIS) through open and public participation	BMC Bioinformatics
	Mapping human genetic diversity in Asia	Science
	MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis	BMC Genomics
	MitoVariome: a variome database of human mitochondrial DNA	BMC Genomics
	PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs	BMC Genomics
	Planning the human variome project: the Spain report	Human Mutation
	Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses	Journal of Dermatological Science
	PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440	BMC Genomics
	ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database	Human Mutation
	Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications	Communicative & Integrative Biology
2008	Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries	Bioinformatics
	Cyanobacterial hybrid kinase Sll0043 regulates phototaxis by suppressing pilin and twitching motility protein	Journal of Microbiology
	The effect of histidine residue modification on tyrosinase activity and conformation: inhibition kinetics and computational prediction	Journal of Biomolecular Structure and Dynamics
	Identification of gene-related Korean patents and construction of a database server for Korean patent sequences	Biotechnology and Bioprocess Engineering
	An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases	BMC Bioinformatics
	An integrated Korean biodiversity and genetic information retrieval system	BMC Bioinformatics
	MassNet: a functional annotation service for protein mass spectrometry data	Nucleic Acids Research
	Personal Genomics, Bioinformatics, and Variomics	Genomics & Informatics
	Pocket extraction on proteins via the Voronoi diagram of spheres	Journal of Molecular Graphs and Modelling
	Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service	BMC Bioinformatics
	Prediction and evaluation of protein-protein interaction in keratinocyte differentiation	Biochemical and Biophysical Research Communications
	Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics	Proteomics - Clinical Applications
	SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions	BMC Bioinformatics
	Structural Bioinformatics Analysis of Disease-related Mutations	Genomics & Informatics
	SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803	BMC Bioinformatics
	Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai	PNAS
2007	Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases	Genetics & Informatics
	CONSORF: a consensus prediction system for prokaryotic coding sequences	Bioinformatics
	Genomic distribution of simple sequence repeats in Brassica rapa	Molecules and Cells
	GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data	Bioinformation
	Impact of transcriptional properties on essentiality and evolutionary rate	Genetics
	Multi-Resolution Protein Model	Lecture Notes in Computer Science
2006	BioCC: An Openfree Hypertext Bio Community Cluster for Biology	Genomics & Informatics
	Developmental rate and ploidy of embryos produced by nuclear transfer with different activation treatments in cattle	Animal Reproduction Science
	Functional annotation and analysis of Korean patented biological sequences using bioinformatics	Molecules and Cells
	Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information	Nucleic Acids Research
	Parameter selection of pocket extraction algorithm using interaction interface	Journal of Zhejiang University - SCIENCE A
	Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa	Plant Cell
2005	Architecture of basic building blocks in protein and domain structural interaction networks	Bioinformatics
	BioCovi: A Visualization Service for Comparative Genomics Analysis	Genomics & Informatics
	BioSubroutine: an Open Web Server for Bioinformatics Algorithms and Subroutines	Genomics & Informatics
	Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)	Bioinformatics
	Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis	Japan Journal of Industrial and Applied Mathematics
	HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis	Genomics & Informatics
	A protein domain interaction interface database: InterPare	BMC Informatics
	PSIbase: a database of Protein Structural Interactome map (PSIMAP)	Bioinformatics
2004	The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions	BMC Genomics
	The Atom of Evolution	Genomics & Informatics
	High Correlation between Alu Elements and the Conversion of 3' UTR of mRNAs Processed Pseudogenes	Genomics & Informatics
	HPID: the Human Protein Interaction Database	Bioinformatics
	Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP)	Bioinformatics
	Using convex hulls to extract interaction interfaces from known structures	Bioinformatics
2003	Biological Network Evolution Hypothesis Applied to Protein Structural Interactome	Genomics & Informatics
	Challenges and New Approaches in Genomics and Bioinformatics	Genomics & Informatics
	Different activation treatments for successful development of bovine oocytes following intracytoplasmic sperm injection	Zygote
	Predicting Protein Interactions in Human by Homologous Interactions in Yeast	Lecture Notes in Computer Science
	Visualisation and graph-theoretic analysis of a large-scale protein structural interactome	BMC Bioinformatics
	Visualization and analysis of protein interactions	Bioinformatics
2002	InterViewer: Dynamic Visualization of Protein-Protein Interactions	Lecture Notes in Computer Science
	Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair	Genomic Informatics
	Protein Interactions in the Whole Human Genome	Genome Informatics
	Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear	BMC Cell Biology
2001	Conservation of protein interaction network in evolution	Genome Informatics
	A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3	Nucleic Acids Research
	Generating protein interaction maps from incomplete data: application to fold assignment	Bioinformatics
	An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server	Genome Informatics
	Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast	Journal of Molecular Biology
	PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information	Nucleic Acids Research
	Protein Classification Comparison Server	Genome Informatics
2000	DaliLite workbench for protein structure comparison	Bioinformatics
	Estimating the significance of sequence order in protein secondary structure and prediction	Bioinformatics
	Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL	Bioinformatics
	RSDB: representative protein sequence databases have high information content	Bioinformatics
	Sequence search algorithm assessment and testing toolkit (SAT)	Bioinformatics
1998	DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins	Bioinformatics
	Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods	Journal of Molecular Biology
	Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements	PNAS
1997	Intermediate sequences increase the detection of homology between sequences	Journal of Molecular Biology
1996	Protein structure prediction: playing the fold	Trends in Biochemical Sciences
	Update on protein structure prediction: results of the 1995 IRBM workshop	Folding and Design
1995	Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials	Proteins