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Created page with "<p><strong>Seung Gu Park, Ph.D</strong></p> <p>Email: seung9park@gmail.com</p> <p><strong>Education </strong></p> <p>08/2009 ~ 02/2014 Kangwon National ..."
<p><strong>Seung Gu Park, Ph.D</strong></p>
<p>Email: seung9park@gmail.com</p>
<p><strong>Education </strong></p>
<p>08/2009 ~ 02/2014 Kangwon National University, South Korea<br />
Ph.D. in Department of Biotechnology</p>
<p>Thesis: Multidimensional integratomic approach in understanding genome evolution, expression and function<br />
Advisor: Prof. Sun Shim Choi</p>
<p>08/2007 ~ 08/2009 Kangwon National University, South Korea<br />
Master of Science in Department of Biotechnology</p>
<p>Thesis: Positive selection signature in the TLR7 family<br />
Advisor: Prof. Sun Shim Choi</p>
<p>03/2001 ~ 08/2007 Kangwon National University, South Korea<br />
Bachelor of Science in Department of Medical Biotechnology</p>
<p><strong>Postdoctoral Fellowship</strong></p>
<p>04/2014 ~ 04/2016 Postdoctoral Research Associate, Hannelhalli Lab, University of Maryland Institute for Advanced Computer Studies (UMIACS), University of Maryland, College Park<br />
Mentor: Prof. Sridhar Hannenhalli</p>
<p>05/2016 ~ Postdoctoral Research Associate, Korean Genomics Industrialization and Commercialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea.<br />
Mentor: Prof. Jong Bhak</p>
<p><strong>Patents</strong></p>
<p>Massive Data Merging Compression Apparatus and Method based on Gene Sequence using Binary Notation, Seung Gu Park and Sun Shim Choi, Korea Patent<br />
Display Apparatus and Method for DNA Sequence and Comments Information, Seung Gu Park and Sun Shim Cho, Korea Patent<br />
Antibody Structure Sequence Numbering Apparatus and Method based on Next Generation Sequencing Data, Seung Gu Park and Sun Shim Choi</p>
<p><strong>Publications</strong></p>
<p>Kim, H.M., Weber, J.A., Lee, N., Park, S.G., Cho, Y.S., Bhak, Y., Lee, N., Jeon, Y., Jeon, S., Luria, V. and Karger, A., 2018. The jellyfish genome sheds light on the early evolution of active predation. bioRxiv, p.449082.<br />
Park, S.G., Luria, V., Weber, J.A., Jeon, S., Kim, H.M., Jeon, Y., Bhak, Y., Jun, J., Kim, S.W., Hong, W.H. and Lee, S., 2018. The whale shark genome reveals how genomic and physiological properties scale with body size. bioRxiv, p.443036.<br />
Shin, E.S., Park, S.G., Saleh, A., Lam, Y.Y., Bhak, J., Jung, F., Morita, S. and Brachmann, J., 2018. Magnetocardiography scoring system to predict the presence of obstructive coronary artery disease. Clinical Hemorheology and Microcirculation, (Preprint), pp.1-9.<br />
Lee, J.S., Das, A., Jerby-Arnon, L., Arafeh, R., Auslander, N., Davidson, M., McGarry, L., James, D., Amzallag, A., Park, S.G. and Cheng, K., 2018. Harnessing synthetic lethality to predict the response to cancer treatment. Nature communications, 9(1), p.2546.<br />
Nair, N.U., Das, A., Amit, U., Robinson, W., Park, S.G., Basu, M., Lugo, A., Leor, J., Ruppin, E. and Hannenhalli, S., 2018. Putative functional genes in idiopathic dilated cardiomyopathy. Scientific reports, 8(1), p.66.<br />
Sahu, A., Lee, J.S., Zhang, G., Wang, Z., Tian, T., Moll, T., Kasumova, G., Miao, B., Wei, Z., Nair, N.U. and Ponomarova, O., 2018. Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy. bioRxiv, p.284240.<br />
Malin, J., Ezer, D., Ma, X., Mount, S., Karathia, H., Park, S.G., Adryan, B. and Hannenhalli, S., 2015. Crowdsourcing: Spatial clustering of low-affinity binding sites amplifies in vivo transcription factor occupancy. bioRxiv, p.024398.<br />
Park, S.G. and Hannenhalli, S., 2015. First intron length in mammals is associated with 5′ exon skipping rate. bioRxiv, p.024463.<br />
Park, S.G., Hannenhalli, S. and Choi, S.S., 2014. Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals. BMC genomics, 15(1), p.526.<br />
Cho, H., Han, S., Choe, J., Park, S.G., Choi, S.S. and Kim, Y.K., 2012. SMG5–PNRC2 is functionally dominant compared with SMG5–SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic acids research, 41(2), pp.1319-1328.<br />
Yang, H., Ko, H.J., Yang, J.Y., Kim, J.J., Seo, S.U., Park, S.G., Choi, S.S., Seong, J.K. and Kweon, M.N., 2012. Interleukin-1 promotes coagulation, which is necessary for protective immunity in the lung against Streptococcus pneumoniae infection. The Journal of infectious diseases, 207(1), pp.50-60.<br />
Cho, H., Kim, K.M., Han, S., Choe, J., Park, S.G., Choi, S.S. and Kim, Y.K., 2012. Staufen1-mediated mRNA decay functions in adipogenesis. Molecular cell, 46(4), pp.495-506.<br />
Mok, Y.J., Park, S.G. and Choi, S.S., 2012. Comparative analysis of the structural and expressional parameters of microRNA target genes. Gene, 497(1), pp.103-109.<br />
Park, S.G., Kwon, K.H. and Choi, S.S., 2012. Analysis of putative miRNA function using a novel approach, GAPPS-miRTarGE. Genes & Genomics, 34(2), pp.205-216.<br />
Park, S.G. and Choi, S.S., 2010. Expression breadth and expression abundance behave differently in correlations with evolutionary rates. BMC evolutionary biology, 10(1), p.241.<br />
Park, S.G., Park, D., Jung, Y.J., Chung, E. and Choi, S.S., 2010. Positive selection signatures in the TLR7 family. Genes & Genomics, 32(2), pp.143-150.<br />
Park, D., Park, J., Park, S.G., Park, T. and Choi, S.S., 2008. Analysis of human disease genes in the context of gene essentiality. Genomics, 92(6), pp.414-418.</p>
<p>Email: seung9park@gmail.com</p>
<p><strong>Education </strong></p>
<p>08/2009 ~ 02/2014 Kangwon National University, South Korea<br />
Ph.D. in Department of Biotechnology</p>
<p>Thesis: Multidimensional integratomic approach in understanding genome evolution, expression and function<br />
Advisor: Prof. Sun Shim Choi</p>
<p>08/2007 ~ 08/2009 Kangwon National University, South Korea<br />
Master of Science in Department of Biotechnology</p>
<p>Thesis: Positive selection signature in the TLR7 family<br />
Advisor: Prof. Sun Shim Choi</p>
<p>03/2001 ~ 08/2007 Kangwon National University, South Korea<br />
Bachelor of Science in Department of Medical Biotechnology</p>
<p><strong>Postdoctoral Fellowship</strong></p>
<p>04/2014 ~ 04/2016 Postdoctoral Research Associate, Hannelhalli Lab, University of Maryland Institute for Advanced Computer Studies (UMIACS), University of Maryland, College Park<br />
Mentor: Prof. Sridhar Hannenhalli</p>
<p>05/2016 ~ Postdoctoral Research Associate, Korean Genomics Industrialization and Commercialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea.<br />
Mentor: Prof. Jong Bhak</p>
<p><strong>Patents</strong></p>
<p>Massive Data Merging Compression Apparatus and Method based on Gene Sequence using Binary Notation, Seung Gu Park and Sun Shim Choi, Korea Patent<br />
Display Apparatus and Method for DNA Sequence and Comments Information, Seung Gu Park and Sun Shim Cho, Korea Patent<br />
Antibody Structure Sequence Numbering Apparatus and Method based on Next Generation Sequencing Data, Seung Gu Park and Sun Shim Choi</p>
<p><strong>Publications</strong></p>
<p>Kim, H.M., Weber, J.A., Lee, N., Park, S.G., Cho, Y.S., Bhak, Y., Lee, N., Jeon, Y., Jeon, S., Luria, V. and Karger, A., 2018. The jellyfish genome sheds light on the early evolution of active predation. bioRxiv, p.449082.<br />
Park, S.G., Luria, V., Weber, J.A., Jeon, S., Kim, H.M., Jeon, Y., Bhak, Y., Jun, J., Kim, S.W., Hong, W.H. and Lee, S., 2018. The whale shark genome reveals how genomic and physiological properties scale with body size. bioRxiv, p.443036.<br />
Shin, E.S., Park, S.G., Saleh, A., Lam, Y.Y., Bhak, J., Jung, F., Morita, S. and Brachmann, J., 2018. Magnetocardiography scoring system to predict the presence of obstructive coronary artery disease. Clinical Hemorheology and Microcirculation, (Preprint), pp.1-9.<br />
Lee, J.S., Das, A., Jerby-Arnon, L., Arafeh, R., Auslander, N., Davidson, M., McGarry, L., James, D., Amzallag, A., Park, S.G. and Cheng, K., 2018. Harnessing synthetic lethality to predict the response to cancer treatment. Nature communications, 9(1), p.2546.<br />
Nair, N.U., Das, A., Amit, U., Robinson, W., Park, S.G., Basu, M., Lugo, A., Leor, J., Ruppin, E. and Hannenhalli, S., 2018. Putative functional genes in idiopathic dilated cardiomyopathy. Scientific reports, 8(1), p.66.<br />
Sahu, A., Lee, J.S., Zhang, G., Wang, Z., Tian, T., Moll, T., Kasumova, G., Miao, B., Wei, Z., Nair, N.U. and Ponomarova, O., 2018. Genome-wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy. bioRxiv, p.284240.<br />
Malin, J., Ezer, D., Ma, X., Mount, S., Karathia, H., Park, S.G., Adryan, B. and Hannenhalli, S., 2015. Crowdsourcing: Spatial clustering of low-affinity binding sites amplifies in vivo transcription factor occupancy. bioRxiv, p.024398.<br />
Park, S.G. and Hannenhalli, S., 2015. First intron length in mammals is associated with 5′ exon skipping rate. bioRxiv, p.024463.<br />
Park, S.G., Hannenhalli, S. and Choi, S.S., 2014. Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals. BMC genomics, 15(1), p.526.<br />
Cho, H., Han, S., Choe, J., Park, S.G., Choi, S.S. and Kim, Y.K., 2012. SMG5–PNRC2 is functionally dominant compared with SMG5–SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic acids research, 41(2), pp.1319-1328.<br />
Yang, H., Ko, H.J., Yang, J.Y., Kim, J.J., Seo, S.U., Park, S.G., Choi, S.S., Seong, J.K. and Kweon, M.N., 2012. Interleukin-1 promotes coagulation, which is necessary for protective immunity in the lung against Streptococcus pneumoniae infection. The Journal of infectious diseases, 207(1), pp.50-60.<br />
Cho, H., Kim, K.M., Han, S., Choe, J., Park, S.G., Choi, S.S. and Kim, Y.K., 2012. Staufen1-mediated mRNA decay functions in adipogenesis. Molecular cell, 46(4), pp.495-506.<br />
Mok, Y.J., Park, S.G. and Choi, S.S., 2012. Comparative analysis of the structural and expressional parameters of microRNA target genes. Gene, 497(1), pp.103-109.<br />
Park, S.G., Kwon, K.H. and Choi, S.S., 2012. Analysis of putative miRNA function using a novel approach, GAPPS-miRTarGE. Genes & Genomics, 34(2), pp.205-216.<br />
Park, S.G. and Choi, S.S., 2010. Expression breadth and expression abundance behave differently in correlations with evolutionary rates. BMC evolutionary biology, 10(1), p.241.<br />
Park, S.G., Park, D., Jung, Y.J., Chung, E. and Choi, S.S., 2010. Positive selection signatures in the TLR7 family. Genes & Genomics, 32(2), pp.143-150.<br />
Park, D., Park, J., Park, S.G., Park, T. and Choi, S.S., 2008. Analysis of human disease genes in the context of gene essentiality. Genomics, 92(6), pp.414-418.</p>